Glyma17g34435 - SoyBase

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Report for Sequence Feature Glyma17g34435

Feature Type:	gene_model
Chromosome:	Gm17
Start:	38398165
stop:	38403505
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma17g34435

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT2G26310	AT	Annotation by Michelle Graham. TAIR10: Chalcone-flavanone isomerase family protein \| chr2:11201770-11203919 FORWARD LENGTH=398	SoyBase	E_val: 3.00E-111	ISS
GO:0042398	GO-bp	Annotation by Michelle Graham. GO Biological Process: cellular modified amino acid biosynthetic process	SoyBase	N/A	ISS
GO:0009570	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: chloroplast stroma	SoyBase	N/A	ISS
GO:0005504	GO-mf	Annotation by Michelle Graham. GO Molecular Function: fatty acid binding	SoyBase	N/A	ISS
PF02431	PFAM	Chalcone-flavanone isomerase	JGI		ISS
UniRef100_I3SC89	UniRef	Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=2 Tax=Medicago truncatula RepID=I3SC89_MEDTR	SoyBase	E_val: 0	ISS
UniRef100_Q58G09	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: Chalcone-flavanone isomerase-like protein n=2 Tax=Arabidopsis thaliana RepID=Q58G09_ARATH	SoyBase	E_val: 1.00E-108	ISS

Expression Patterns of Glyma17g34435

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology

Glyma17g34435 not represented in the dataset	Glyma17g34435 not represented in the dataset
Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma17g34435

Paralog	Evidence	Comments
Glyma14g11151	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma17g34435 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.17g226600	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma17g34435

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Coding sequences of Glyma17g34435

Limit To All Plant Sequences

>Glyma17g34435.1   sequence type=CDS   gene model=Glyma17g34435   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGAACAACGATTTCGTTTGGCTTCCTTCGCTGTATTCCGATCCGGAACTATTCACCTATCTGGAGCCATTCGTGTTCCGCAGTTCTCCGAGCTCGCATTTCCTGCAATCGATGGCGAACAATTCCAGAAGCTTCGCGCTCGAGGAGGCGTTCGGACACGTGTCGCGGTTCGCCGGCGCGTTGCTGTTCTGGCTCTCGCGCGCGTCGAGTTCCAATTTGGCGCGTTCGCTGCGCGGTTCTTCTCCGCCGCTTCGGTTCGGTAGCGTGCAGGTTAAGGCTGTGTCGACGAATGTGCGCGTGTTCGGGTTTCCGTTCGGATTGAAGAGGAAATCGTCGTTTGCGAGTGTGAGGTTGGGGAAGATTTCTAGTTTGGCGATGAGGATGATTTGGAGAGAAGCGAAGAGGCTTCGCTCGTTCCCTGTTCTGTCGCTGGCGGCTGCGTTGGTTCCACCGTTTCAAAACTTGTCATCAAATGTACTATCTAGCCCGTTGCAGAATCCTGATGTGCAAATGTTTGGAGCCATGGACCAAGTGCCTAAGGAGGTTGAATGCCAAGGATGTGCATTCCTACCGTGTCTTGAGTTGAACCAGGCAAAACCTGCAGTGGAGCCTAAGACTGGTATTGAATTTCCTTTGGTTCTAGACAATATATTCACTGGAGAGAAGAATTATGACTTCAACTCTGAGGTCCTGGTTGGAACAGGATCCAGAACCATGACAATTGTTAAAATCAAGTCACTGAAGGTCTATGCTTTTGGAGTTTATGTTCATCCATATTCCCTCTGTGAGAAATTGGGGCCGAAATATGCATCAATTTCTGCTGATGAATTGAATAACCATCATGACTTCTATAAGGATCTTCTCAGGGAGGATATTAATATGACTGTTAGACTTGTTGTAAATTGCAGGGGCATGAAAATTAACAGCGTGAAGGATGCTTTTGAAAAATCACTTCGAGCTCGATTAGTAAAGACAAATCCATCCACGGACTTTAGCTGCCTAAAGACATTTGGTTCATACTTCACAGAGAATTTCTCAATTCCTTTGGGAACGATAATTGAGTTCAAACGAACAGTTGATGGACGTCTGATCACTAAAATTAGTGGCAATCAGATAGGAAGTGTCCACTGCAAAGATTTGTGCCGGGCTTTCTTTGACATGTACATTGGAGATGTCCCTGTGTGTGAACAAACTAAAAAGGAGATTGGCATGAATGCTGCGAATATTATTAGGAAGTGCTAA

Predicted protein sequences of Glyma17g34435

Limit To All Plant Sequences

>Glyma17g34435.1   sequence type=predicted peptide   gene model=Glyma17g34435   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MNNDFVWLPSLYSDPELFTYLEPFVFRSSPSSHFLQSMANNSRSFALEEAFGHVSRFAGALLFWLSRASSSNLARSLRGSSPPLRFGSVQVKAVSTNVRVFGFPFGLKRKSSFASVRLGKISSLAMRMIWREAKRLRSFPVLSLAAALVPPFQNLSSNVLSSPLQNPDVQMFGAMDQVPKEVECQGCAFLPCLELNQAKPAVEPKTGIEFPLVLDNIFTGEKNYDFNSEVLVGTGSRTMTIVKIKSLKVYAFGVYVHPYSLCEKLGPKYASISADELNNHHDFYKDLLREDINMTVRLVVNCRGMKINSVKDAFEKSLRARLVKTNPSTDFSCLKTFGSYFTENFSIPLGTIIEFKRTVDGRLITKISGNQIGSVHCKDLCRAFFDMYIGDVPVCEQTKKEIGMNAANIIRKC*

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